Package: cito 1.1.1
cito: Building and Training Neural Networks
The 'cito' package provides a user-friendly interface for training and interpreting deep neural networks (DNN). 'cito' simplifies the fitting of DNNs by supporting the familiar formula syntax, hyperparameter tuning under cross-validation, and helps to detect and handle convergence problems. DNNs can be trained on CPU, GPU and MacOS GPUs. In addition, 'cito' has many downstream functionalities such as various explainable AI (xAI) metrics (e.g. variable importance, partial dependence plots, accumulated local effect plots, and effect estimates) to interpret trained DNNs. 'cito' optionally provides confidence intervals (and p-values) for all xAI metrics and predictions. At the same time, 'cito' is computationally efficient because it is based on the deep learning framework 'torch'. The 'torch' package is native to R, so no Python installation or other API is required for this package.
Authors:
cito_1.1.1.tar.gz
cito_1.1.1.zip(r-4.7)cito_1.1.1.zip(r-4.6)cito_1.1.1.zip(r-4.5)
cito_1.1.1.tgz(r-4.6-any)cito_1.1.1.tgz(r-4.5-any)
cito_1.1.1.tar.gz(r-4.7-any)cito_1.1.1.tar.gz(r-4.6-any)
cito_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
cito/json (API)
NEWS
| # Install 'cito' in R: |
| install.packages('cito', repos = c('https://citoverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/citoverse/cito/issues
Pkgdown/docs site:https://citoverse.github.io
- tree_data - Tree Data
machine-learningneural-network
Last updated from:54d21232aa. Checks:7 WARNING, 1 OK, 1 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 182 | ||
| source / vignettes | OK | 236 | ||
| linux-release-x86_64 | WARNING | 170 | ||
| macos-release-arm64 | WARNING | 204 | ||
| macos-oldrel-arm64 | WARNING | 147 | ||
| windows-devel | WARNING | 139 | ||
| windows-release | WARNING | 108 | ||
| windows-oldrel | WARNING | 119 | ||
| wasm-release | FAIL | 1433 |
Exports:ALEanalyze_trainingavgPoolcnnconditionalEffectsconfig_lr_schedulerconfig_optimizerconfig_tuningcontinue_trainingconvcreate_architecturednnelinearmaxPoolmmnPDPtransfertune
Dependencies:abindbackportsbitbit64bootcallrcheckmateclicorocrayondescfarverfilelockfsgluegridExtragtablehmsjpegjsonlitelabelinglatticelifecyclelme4magrittrMASSMatrixminqanlmenloptrparabarpillarpkgconfigpngprettyunitsprocessxprogresspsR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangsafetensorsscalestibbletifftorchtorchvisionutf8vctrsviridisLitewithrzeallot
Advanced: Custom loss functions and prediction intervals
Rendered fromD-Advanced_custom_loss_functions.Rmdusingknitr::rmarkdownon Jun 02 2026.Last update: 2024-03-05
Started: 2023-09-29
Convultions neural networks and Multi modal neural networks
Rendered fromE-CNN_and_MMN.Rmdusingknitr::rmarkdownon Jun 02 2026.Last update: 2025-05-27
Started: 2025-05-27
Example: (Multi-) Species distribution models with cito
Rendered fromC-Example_Species_distribution_modeling.Rmdusingknitr::rmarkdownon Jun 02 2026.Last update: 2024-03-18
Started: 2023-09-29
Introduction to cito
Rendered fromA-Introduction_to_cito.Rmdusingknitr::rmarkdownon Jun 02 2026.Last update: 2024-03-16
Started: 2023-09-29
Training neural networks
Rendered fromB-Training_neural_networks.Rmdusingknitr::rmarkdownon Jun 02 2026.Last update: 2024-03-06
Started: 2023-09-29
